HsaALTA1021847-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43934426-43935259:-
Coord C1 exon
chr19:43934924-43935259
Coord A exon
chr19:43934631-43934694
Coord C2 exon
chr19:43934426-43934630
Length
64 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CTTCTTTCTGATTCCTGCAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
GAGAGCGCGGCCTTCATTCCTCTCGTGGAAGTGAGTGAGTCCTGGGACCCCGCGACCTGTTTTAACTTTTATGGTTTGGTCGTAGGATCAGCAGGGCTCGCACTTCGGTCAGCAGGAAAAGACGCTGCGGCGAGCAGCGGAGGGCGGAGTTGAATGGCTGGGCAGCTGATTGCCTTACTGTATCCGGAGCTGCTGCGTTCGGGGCGGTTCGGGAGTCCCCTGGTTGGAAGTGGACCTGAATGGGGAGGCGTCTGAGGATCTCCTGGGCTCTCAGCGGCCCGACCCGCCTTCCCCCACCTCCCACAGCTCTGTAGCTTCCTAGCGGTGTAACGTTGG
Seq A exon
GAAAGGAGGCTGTTCTTGGACTATGCCTGACCCGTTTTTTAAGAAAGAGTGCATCACTCAACAG
Seq C2 exon
GTGGCGTCTGGAGTTATCCTCTGTGGATTTTCCAGGATCTCAGACAAGATCGTGCAATCTCCCAGCCTCCTTTCCTTCCCCTGCCCTGACTTCTGAAAGAATGCTGCGGGAGAGGAGGAAGGAGAGCATCCTGGCTTCTGGCAGCAGAGCCCCACTGTGACAGGACCTAGCATTCACCTTCCTCTTCTGTTCCGAGTGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-2-2,2-1,2-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTAGCGGTGTAACGTT
R:
CTCCCGCAGCATTCTTTCAGA
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains