HsaALTD1053793-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43934426-43935330:-
Coord C1 exon
chr19:43935230-43935330
Coord A exon
NA
Coord C2 exon
chr19:43934426-43934694
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTTCTTTCTGATTCCTGCAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
CCTCCCGGGGATGCTGGGAAATGTAGTTCCAGAGCTCCCTGCTCTCCCGGGCACTTCCGCGGCAAGAGGTTGAGAGCGCGGCCTTCATTCCTCTCGTGGAA
Seq A exon
NA
Seq C2 exon
GAAAGGAGGCTGTTCTTGGACTATGCCTGACCCGTTTTTTAAGAAAGAGTGCATCACTCAACAGGTGGCGTCTGGAGTTATCCTCTGTGGATTTTCCAGGATCTCAGACAAGATCGTGCAATCTCCCAGCCTCCTTTCCTTCCCCTGCCCTGACTTCTGAAAGAATGCTGCGGGAGAGGAGGAAGGAGAGCATCCTGGCTTCTGGCAGCAGAGCCCCACTGTGACAGGACCTAGCATTCACCTTCCTCTTCTGTTCCGAGTGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-0-1,1-1,2-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTCATTCCTCTCGTGGA
R:
ATAACTCCAGACGCCACCTGT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains