HsaALTA1022018-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000124788 | ATXN1
Description
ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
Coordinates
chr6:16401914-16657901:-
Coord C1 exon
chr6:16657776-16657901
Coord A exon
chr6:16402282-16402284
Coord C2 exon
chr6:16401914-16402281
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGACCAAGCATTAGAACTAGAAG
3' ss Score
-7.09
Exon sequences
Seq C1 exon
CATACTGGAGCATAGTGAAAGAGTCTATTTTGAAGCTTCAAACTTAGTGCTGCTGCAGACCAGGAACAAGAGAGAAAGAGTGGATTTCAGCCTGCACGGATGGTCTTGAAACACAAATGGTTTTTG
Seq A exon
AAG
Seq C2 exon
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGTCAGTGGTTGGCGAGAAGTCTTGTTTTTTCCAGCCATATAGATCAACTGATGATATGGTTTGGCTGTGTCCCTGCCCAGATTTCATCTTGACCTCCCATGTGTGTGGGAGGGACCTGGTGGGAGGTATTGAATCATGGGGGGCAGGTCTTTCCCATGCTGTTCTCGTGGTAATGGATAAGTCTCACGAGATCTGATGGTTTTAAAAAGAGGCATTCCCCTGCATAAGCTCTCTCTCATTTTTTGCCTGCCACCATCCATGTAAGATGTGACTTGCTCCTCCTTGCCTTCCACCATGATTGAGAGGCTTCCTCAGCCATGTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124788-28-57,28-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACGGATGGTCTTGAAA
R:
CTCGCCAACCACTGACAGTTT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains