HsaALTA1022508-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000125945 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
Coordinates
chr1:23367042-23368065:-
Coord C1 exon
chr1:23367973-23368065
Coord A exon
chr1:23367169-23367269
Coord C2 exon
chr1:23367042-23367168
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTTATTTGGACTCTATAGGTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
CGCTGTCTGCTAGCTGCTTTTCCTGCTCTCTCTCCCTGGAGGCGAACCCTTGTGCTCGAGATGGCAGCCACCCTGCTCATGGCTGGGTCCCAG
Seq A exon
GTCACATTTAATATATTTTTCCTCCTGAATATTTCTAATCATGTTTCTAATTTCAAGAAGTCCTAAATACAGAATAGTAGGGAAGTATCGTGTGATTTCAG
Seq C2 exon
GCACCTGTGACGTTTGAAGATATGGCCATGTATCTCACCCGGGAAGAATGGAGACCTCTGGACGCTGCACAGAGGGACCTTTACCGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125945-1-5,1-4,1-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCTGCTAGCTGCTTTT
R:
AGTGAGACAACATTTCCATAATTCTC
Band lengths:
218-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains