MmuALTA0020644-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000051351 | Zfp46
Description
zinc finger protein 46 [Source:MGI Symbol;Acc:MGI:99192]
Coordinates
chr4:135842342-135843230:+
Coord C1 exon
chr4:135842342-135842396
Coord A exon
chr4:135842987-135843103
Coord C2 exon
chr4:135843104-135843230
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTCCTTCGGACTCTACAGATG
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGTCTGGGACTCAG
Seq A exon
ATGAGACTTAATGCCACTGCCTTCTCGACATTTCTAACCATGTCTCTAATTTCAAGAAGAAAAGCTGGTTCTAAACTCCTAGATACCAAGTAGTGAGGAAGCGTTGTGTGATTTCAG
Seq C2 exon
GCCCCTGTGACATTTGAAGATATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATGTGATGCAGGAGAATTACGGAAATGTTGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051351-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.319
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGAACGCTTGAGCCC
R:
CCAGTGAGACAACATTTCCGT
Band lengths:
182-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: