MmuALTA0020644-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000051351 | Zfp46
Description
zinc finger protein 46 [Source:MGI Symbol;Acc:MGI:99192]
Coordinates
chr4:135842342-135843230:+
Coord C1 exon
chr4:135842342-135842396
Coord A exon
NA
Coord C2 exon
chr4:135843104-135843230
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAAGCGTTGTGTGATTTCAGGCC
3' ss Score
3.84
Exon sequences
Seq C1 exon
GAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGTCTGGGACTCAG
Seq A exon
NA
Seq C2 exon
GCCCCTGTGACATTTGAAGATATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATGTGATGCAGGAGAATTACGGAAATGTTGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051351-2-6,2-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.319
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGAACGCTTGAGCCC
R:
CCAGTGAGACAACATTTCCGT
Band lengths:
182-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: