BtaALTA0034018-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002594 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
Coordinates
chr2:130079586-130080592:+
Coord C1 exon
chr2:130079586-130079678
Coord A exon
NA
Coord C2 exon
chr2:130080466-130080592
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAAGCAATGTGTGATTTCAGGCA
3' ss Score
2.26
Exon sequences
Seq C1 exon
CGCTGTCTGCTAGCTGCTTTTCCTGCTCTCTCTCCTGGGAGGCGAATCCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGGCTGGGTCCCAG
Seq A exon
NA
Seq C2 exon
GCACCTGTGACATTTGAAGATATGGCCATGTACCTCACCCGTGAAGAATGGAGACCTCTGGACCCTACACAAAGGGACATTTACAGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002594-7-3,7-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCTGCTAGCTGCTTTT
R:
CCTTTGTGTAGGGTCCAGAGG
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development