MmuALTA0020644-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000051351 | Zfp46
Description
zinc finger protein 46 [Source:MGI Symbol;Acc:MGI:99192]
Coordinates
chr4:136286427-136287315:+
Coord C1 exon
chr4:136286427-136286481
Coord A exon
NA
Coord C2 exon
chr4:136287189-136287315
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAAGCGTTGTGTGATTTCAGGCC
3' ss Score
3.84
Exon sequences
Seq C1 exon
GAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGTCTGGGACTCAG
Seq A exon
NA
Seq C2 exon
GCCCCTGTGACATTTGAAGATATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATGTGATGCAGGAGAATTACGGAAATGTTGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051351-4-5,4-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.256
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGAACGCTTGAGCCC
R:
CCAGTGAGACAACATTTCCGT
Band lengths:
182-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types