MmuEX0053367 @ mm10
Exon Skipping
Gene
ENSMUSG00000051351 | Zfp46
Description
zinc finger protein 46 [Source:MGI Symbol;Acc:MGI:99192]
Coordinates
chr4:136284683-136287315:+
Coord C1 exon
chr4:136284683-136285095
Coord A exon
chr4:136286427-136286481
Coord C2 exon
chr4:136287072-136287315
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTCTCTCTCTCCCAGGAG
3' ss Score
11.47
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTACAGCAAGCTGGGAGCTCTTCCCCACACAGAATCCCTGTTTTGCTTAGCCCTCGCCTTCCATTGTCTAATTCCTTCATCCCCGCTAGGGAAAGGAAAGGCTACAAGTCCTTCCATTTGGAGGATTCTGAGTGAATGCAGCATAGCCAACGCTGATGTTTCTTGGCCAGCTGTTGTGGCCTCGGAGATCTGTTTATGAGATTGTTGTTTCCCGGAGCTATAGAACAGTCTCTGCAGTCTTGAAGCTTTGTGCTCATCCTACAACCAAACCCTGCCCTTTGCCTGTTAATCCATGGATTCGGATTTCTATTCATGGCCCTGAGATCTCTGGAATCTGCTGGTGATATCTAGAACCTTTCTGAACGTCAGGCCTCTTTAGATCTCTGAGGAGCCAGCGACCACAGACCAGGAG
Seq A exon
GAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGTCTGGGACTCAG
Seq C2 exon
ATGAGACTTAATGCCACTGCCTTCTCGACATTTCTAACCATGTCTCTAATTTCAAGAAGAAAAGCTGGTTCTAAACTCCTAGATACCAAGTAGTGAGGAAGCGTTGTGTGATTTCAGGCCCCTGTGACATTTGAAGATATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATGTGATGCAGGAGAATTACGGAAATGTTGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051351_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.197
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGCCCTGAGATCTCTGG
R:
AAATGTCGAGAAGGCAGTGGC
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types