HsaEX0073680 @ hg19
Exon Skipping
Gene
ENSG00000125945 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:20814]
Coordinates
chr1:23693535-23695935:-
Coord C1 exon
chr1:23695859-23695935
Coord A exon
chr1:23694466-23694558
Coord C2 exon
chr1:23693535-23693661
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTCGCCTCCTTCAGCGC
3' ss Score
9.04
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTGCGGCTCTGGAACCCGTTCGCGGTCTCTCAGGTTTTGGAGACGACGATCTAGTGGATCTTTTGCGGGACAGGAG
Seq A exon
CGCTGTCTGCTAGCTGCTTTTCCTGCTCTCTCTCCCTGGAGGCGAACCCTTGTGCTCGAGATGGCAGCCACCCTGCTCATGGCTGGGTCCCAG
Seq C2 exon
GCACCTGTGACGTTTGAAGATATGGCCATGTATCTCACCCGGGAAGAATGGAGACCTCTGGACGCTGCACAGAGGGACCTTTACCGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125945_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.273 C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGAACCCGTTCGC
R:
TCTCCTGCATAACATCCCGGT
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)