RnoEX0000176 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr5:154643289-154647300:+
Coord C1 exon
chr5:154643289-154645089
Coord A exon
chr5:154646415-154646469
Coord C2 exon
chr5:154647174-154647300
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTCTCTCTACCAGGAG
3' ss Score
11.98
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTGGGAGTCCCTAATAAGCTGCTATATTCTTTTTCCACCACTTCCCTCTCCAAGGCTACAGCAAGCTGGGAGCTTGTCCCCACACAGAATCCTTGTTTTGCTTAGCCCTCGCCTTCCATTGTCTAATTCCTTCATTCCAGCTAAGGAAAGGGAATGCTAGAAGTCCTTCCATTTGGAAGACTCTTGCCGAATGCAGCATAGCCAATGCTGATGTTTCTTGGCCAGCTGCTGTGGCCTCGGAGATCTGTTTATGAGATTGTTATTTCCAGGAGCTATATAGAACAGTCTCTGCAGTCTTGAAGCTTCGGGTTCATCTTACAATCAAACTGTCCTTTGCCTGTTAATCTATGGATTCGGATTTCTACTCCTGGCGCTGAGATCTCTGGAATCTGCTGGTGATATCTAGAATCTTTCTGAATGTCAGGCCTCTTTAGATCTCTGAGGCTTTAGGATCTCAGGCTTCTCAAGGATCTTGGAGCTAGCGACCACAGACCAGAAG
Seq A exon
GAGACGAACGCTTGAGCCCGAGATGGCAGCCACCCTACTCATGTCTGGGTCCCAG
Seq C2 exon
GCCCCTGTGACATTTGAAGATATGGCCATGTTCCTCACTCGGGAAGAATGGAGACCCCTGGATCCTACACAAAGAGACCTTTACAGGGACGTGATGCAGGAGAATTATGGAAATGTCGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.148877_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGAGCTAGCGACCACA
R:
ATTCTCCTGCATCACGTCCCT
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]