BtaEX0041311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002594 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
Coordinates
chr2:130078177-130080592:+
Coord C1 exon
chr2:130078177-130078277
Coord A exon
chr2:130079586-130079678
Coord C2 exon
chr2:130080466-130080592
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTCGCCTCCTATAGCGC
3' ss Score
8.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGCAGTCTCAAGAGAACTCTGCCTGAGGATTTGAAATCTGTTTTGAGGCCTCTTGGATCTTTTGAAGCCAGAGACCTAACGCATCTTTTGCTGGCCAGGAG
Seq A exon
CGCTGTCTGCTAGCTGCTTTTCCTGCTCTCTCTCCTGGGAGGCGAATCCTTGAGCCCGAGATGGCAGCCACCCTGCTCATGGCTGGGTCCCAG
Seq C2 exon
GCACCTGTGACATTTGAAGATATGGCCATGTACCTCACCCGTGAAGAATGGAGACCTCTGGACCCTACACAAAGGGACATTTACAGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002594-'0-3,'0-0,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.545 C2=0.209
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTCAAGAGAACTCTGCC
R:
GTGTAGGGTCCAGAGGTCTCC
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development