HsaALTD0000907-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000249087 | C1orf213
Description
chromosome 1 open reading frame 213 [Source:HGNC Symbol;Acc:25122]
Coordinates
chr1:23695791-23697702:+
Coord C1 exon
chr1:23695791-23695817
Coord A exon
NA
Coord C2 exon
chr1:23697632-23697702
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTGTTTCTTTTATTCCTCAGGCC
3' ss Score
10.82
Exon sequences
Seq C1 exon
ATGTTAGCAGTCCCTGTCCGGTTGAAG
Seq A exon
NA
Seq C2 exon
GCCTGCGGGGCGGGGGCGGGGTGGCGCCCAGGACGACTCCCCGGGCTCAGCTTGGCTGCCTGCCTCCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249087-1-4,2-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)