HsaALTA1022870-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41848871-41918498:-
Coord C1 exon
chr1:41918413-41918498
Coord A exon
NA
Coord C2 exon
chr1:41848871-41849035
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCCTGCTGGATCTTGTCCAGTCG
3' ss Score
4.31
Exon sequences
Seq C1 exon
CCTGCCTGGCCGGAATAATTCATGAAGAAGGGGCTGGATCCGTGGGTCAGAGAACACAGGACCAGTTTGCCATCCCAAGGCCGAAG
Seq A exon
NA
Seq C2 exon
TCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCAGAGGTTGAGGACACTGGTGCTTGAAGGGAAACTGGCACACTCTGGAGCCCCAAGAAGAGCTGGAGCTGGAGGCATGCGGCCCACGAAGGGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-5-24,5-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGGACCAGTTTGCCA
R:
CCTTCAAGCACCAGTGTCCTC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains