HsaEX0030069 @ hg38
Exon Skipping
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41628749-41918707:-
Coord C1 exon
chr1:41918413-41918707
Coord A exon
chr1:41700916-41700995
Coord C2 exon
chr1:41628749-41628947
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTCTACTTCCCACAGGCC
3' ss Score
11.06
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCACAACCAGCCGACTCTCCCATTATCCAGCTGCCTAGTTTGGTGCTTCAATGTACATGGCTATTCCGTGTGCATATGTGTGTATACAAACACGCATGCATGCCTGGATGGACATACGTATGCACAGGTTATTTTTTAAGGACAATTCTTTCAATAAGGTCTTTACCCCTTACTTGAAACAGGTGTTCATGAAAAAAATGCACAAAATCCTGCCTGGCCGGAATAATTCATGAAGAAGGGGCTGGATCCGTGGGTCAGAGAACACAGGACCAGTTTGCCATCCCAAGGCCGAAG
Seq A exon
GCCTCCCTCCAACACAGTTCTCCAAGCTCTAGAAATCTCTGACACATCTTGACCATGAGACCACGGCTGGTTTTTGGCAG
Seq C2 exon
GATTCGAGGCACAAACCCAGCAGCCTCAACCTAGTTCATGGAGGAGCCTCGCGGGGTCCTGGCCAAGCAAGCCCGCCCCTCTGGTGGGAAGAGCGGCGCCTAGGTGGAGGGTGGCTGCCGTAGGAGTGGACATGAATGCTGGCTTTCAGAGAGAACAGCGTTTCAGTTTTGGTCATCGGAAGTGGTGCCTTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124_MULTIEX2-7/7=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGGACCAGTTTGCCA
R:
TTCATGTCCACTCCTACGGCA
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development