RnoEX0041990 @ rn6
Exon Skipping
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:138875727-139007674:+
Coord C1 exon
chr5:138875727-138875827
Coord A exon
chr5:138938957-138939034
Coord C2 exon
chr5:139007574-139007674
Length
78 bp
Sequences
Splice sites
3' ss Seq
TACTTCTCTGTCCCCAACAGGTC
3' ss Score
10.68
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAAATGCACTATATCCCGACTGACCGGAATAATTGAAGAAGGGTGCTGGATCCGTGGGTCAGAGAACACACAGGACCAGCTTGCTACCCCAAGGCTGAAG
Seq A exon
GTCTCCCTCTGACAGCCTTGACGCTCTTGAGAATCTCTGGCCTGCCTTGACCATGACATCCCAGCAAGCTCCTGATAG
Seq C2 exon
GAGCAGAGGCACAAACCAAGCTGCCTTGAAGTAGCTCATGGGAGACTCTCGAGAGCCACTGACCAGGCACACTGTCCCTCCCTCAGGAAGGAGCAGTGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTATATCCCGACTGACCG
R:
GACAGTGTGCCTGGTCAGTG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]