MmuEX6095708 @ mm10
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119814678-120065063:+
Coord C1 exon
chr4:119814678-119814790
Coord A exon
chr4:119997174-119997252
Coord C2 exon
chr4:120064867-120065063
Length
79 bp
Sequences
Splice sites
3' ss Seq
TACTTCTCTGTTCCCAACAGGCC
3' ss Score
10.25
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTTTATGAAAAAAAATGCACAATATCCCGACTGACCGGAATAATTGAAGAAGGGTGCTGGATCCGTGGGTCAGAGAACACACAGGACCAGCTTGCTACCCCAAGGCTGAAG
Seq A exon
GCCTCCCTCTGACACAGCCTTGAAGCTTTCAGAATCTCTGGCCTAGCTCCACCATGACATCACAGCTTGCTCCTTATAG
Seq C2 exon
GATCAGAGGCACAAACCAAGCTGCCTCGAAGTAGCTCATGGAAGACTCTGGAGAGCCGCTGGCCAGGCACGCTACCCCTTCCTCAGGGAGAAGCAGTGTGTAAGCAGAGGCTTTGCGGCCGGAGTGGACATGAACGCTGGCTTCCAGAGAGAGCAGCGCTTCAGTTTTGGTCATCGGAAGTGGTGCCTGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634-'12-16,'12-12,27-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTACCCCAAGGCTGAAG
R:
CTGGAAGCCAGCGTTCATGTC
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types