HsaEX1016856 @ hg38
Exon Skipping
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41700916-41849035:-
Coord C1 exon
chr1:41848871-41849035
Coord A exon
chr1:41846383-41848445
Coord C2 exon
chr1:41700916-41700995
Length
2063 bp
Sequences
Splice sites
3' ss Seq
AGCACTCTCCGTGTTTGCAGGTA
3' ss Score
8.95
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCAGAGGTTGAGGACACTGGTGCTTGAAGGGAAACTGGCACACTCTGGAGCCCCAAGAAGAGCTGGAGCTGGAGGCATGCGGCCCACGAAGGGTAGAA
Seq A exon
GTACCAGCCATGACCAAGAGCCCTTCACATCATCTGGCAATCCATCCAGAACCCACTGAATGGAGGACAGCACAGCGAGGTCTTTCTCATTTTGTAACTGCAAAAGCTGGAACAAGAGCCAGAGAAGCCAAAGAAGCAGTACAAGTCCAACAGCTTTTAGAATAACCCTGAGAAAATGGTTGAATTTTGACCAGTTTTGCAATTGGATACTATGAGAAGAGACCTTCCCTCCTGCACTGGATTTCATCATCATACCTGGAGGCCATTCCTCATGGGACTTTGGCCATCTCATATCCACCTTTAAGCATGTTATTCCCATTTCAGCTGTGGTAGCTCTGGGTATCCTTCCCTAGGAGAAAATATTAATCTTTTCTCCCTCTGAGTTCTGGATTAAACTGTCTTATCTGAAACTGGGTCACTTTAGGCTAGAAGCACCACTAGACATTCCTGTTCTCAGAAGTTGCCAAGTTCATGTCATATCTGTTTCATTGTTAACGGGATCCACTTCTGCAAGAGGCTGCCTGGCCAGATCAGTGTGTCTCCTGGTCAGCTCCTTGATGCCCTTCTCCTCTCCCCTGCCCAATCCCAGCTGAGACTTGCACTGTGGTGACTCTGTCCCCTCCTGGTGCTTTGACTGGATGTGTGAGAGAAAGTATGGTCTGTGGCACTGACATCTTTGTGTGTTTGGAGGTGACTGGAACACGGATCCACCCCTGGAGGAAGGTGGCCGTGAAGGAGGCCAGCCTCAGCTCAGCGTTCTACTCTCATCGCTCTTACTCCCGCCTTTTTAGTGCCTGCCCTACTCCAGGATAATTGTGCTTTTCTTTTTTCAGTTAAATGTTAGCATTGCTATTTTTCATTATTGCAAAGCAGCACATGCTTGTTACAAAAACTTTGGAAGTGTAGACAAATAAAAAGAAGAAAAAGCTACTTCCAAATCCTACTTACCCCAAAGACAAGATGATCATTTAGTCATATAGTATCATACATATATAATATGTACACATATATTTTAATGTAAGTGTAGTGTCACAATATCATGTATAGTCTTTCATAAAACACGTTGGCACTTAATATCTTATATGAACAACTTTCTAGAGCAACAAGCTTAGTTTACAGCAATTGTAATGTAAGAGTACTCATTTACATAGCTACAGCATCCTTTGTTTACCTCATCTCTTATGGTTTGATGTTTAGGTTGTTTCCAACTTTTCTCCACCTAAACAGCATTAATAAATGTGGTTTTAGTTTCCTCTTCCTATGACTAATTATTTCCTTAAGATGAATCCCCAGAAAAGAATCAAAAGAAAATTTGCAAAAGTTACAAAGATGTCAAAGTATGGAGCCAGCATTAACTGCTCAGAACCCAAATGCATGAGAGACTAGGTTGCTGGGAAGGCCACATATGCCCTTTCCTGGATGCCTTTATATAGCCACACTTGGGTGGCTCTGGCTTCCGTTGCCTTGCCTGGAACAGGGAATACCCATGAATGATGACTGAGGTGAGCAGGCAGTGAATGAGGGAGTGGTGTTGTCTCTTTGGGGTTAGTATGTGGCTATATCCCATGAGTGCTCATTGGATGCTGAGAAACAGTCATTTGTTCATTCTTTCATTACCCATCTATGGAGGAGCCGCTGTTGCAAGGCACCAGGCAAGAGGCTGAGAAGACAAAGATGAATTAAATAGGGACTTCATTCTTGGGAAGATCACAGCCTGGCAAAGGCCAGTGACTCATCACACACATTTACTTCACAGTGTAGTAAGAGGAAAAACAGAAGTTCAGTAATGCATCTCAGGGCAGAAAACTTGGAAAAATCTGAAAGTCCCAAGGAAAAAATATGAAACATCACATAATCCTCTGGCCCATTCCTCACAGCGAACACGTTCAGGTGTATCCTTTAGGCTATGAGCCTGGCTTGCTTGTGGTCATCCTCACCGGATACAACCTTGACGGCATTGCCTGTGTCCTGCATTGGCACCTCTGGTGACCTGGCACCATCTTAGACAACTTCCTCTGAAATCTATTAAATGAAAAATCCAACAGGAGTTAACAGAATGAAAG
Seq C2 exon
GCCTCCCTCCAACACAGTTCTCCAAGCTCTAGAAATCTCTGACACATCTTGACCATGAGACCACGGCTGGTTTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124_MULTIEX2-6/7=5-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains