HsaALTA1023254-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr17:19412498-19412973:+
Coord C1 exon
chr17:19412498-19412783
Coord A exon
chr17:19412938-19412940
Coord C2 exon
chr17:19412941-19412973
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCTCTCTTCTCCTGGCCCAGGAG
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTCCCATACACCTTTCCCCAAGTTGGAGCTAGGCCTGGGGCCCCAGCCCATGGCGCCCCGGGAGCTCCCTACCTGCTCCATCTGCCTGGAGAGGTTGCGCGACCCCATCTCGCTGGACTGTGGCCACGACTTCTGCATACGGTGCTTCAGCACACACCGTCTCCCGGGCTGTGAGCCGCCCTGCTGTCCTGAGTGCCGGAAGATATGCAAGCAGAAGAGGGGCCTCCGGAGCCTGGGCGAGAAGATGAAGCTCCTGCCGCAGCGGCCGCTGCCCCCTGCACTGCAG
Seq A exon
GAG
Seq C2 exon
ACGTGTCCTGTGAGGGCGGAGCCGCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-8-7,8-6,8-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=44.1)
A:
NA
C2:
PF0226314=GBP=PU(19.0=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCAAGCAGAAGAGGGGC
R:
CTCCGCCCTCACAGGACA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains