HsaALTA1024480-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9157268-9158075:+
Coord C1 exon
chr19:9157268-9157394
Coord A exon
NA
Coord C2 exon
chr19:9157980-9158075
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTCTTTCCCGTGAGTGTAGGGT
3' ss Score
2.99
Exon sequences
Seq C1 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
Seq A exon
NA
Seq C2 exon
GGTATCAGGTCGGCAAACCCAGCCTCATCTCACACTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCGCTCACCAGGGCGCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-9-8,9-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.605
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTGACTTTCCAAGATGTCG
R:
CACAAGCGCCCTGGTGAG
Band lengths:
218-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains