RnoALTA0045629-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19887752-19888901:+
Coord C1 exon
chr8:19887752-19887878
Coord A exon
chr8:19888806-19888844
Coord C2 exon
chr8:19888845-19888901
Length
39 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTGTCTTTCCCCGTGAGTAGGTT
3' ss Score
6.81
Exon sequences
Seq C1 exon
GAGTTCGTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGG
Seq A exon
GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAG
Seq C2 exon
AGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684-8-13,8-12,8-11,8-10-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCCCCTGCTAGATTCTT
R:
ACTGCTGAATGCCTCTCTCCT
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]