RnoINT0168023 @ rn6
Intron Retention
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19887752-19888901:+
Coord C1 exon
chr8:19887752-19887878
Coord A exon
chr8:19887879-19888805
Coord C2 exon
chr8:19888806-19888901
Length
927 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTGTCTTTCCCCGTGAGTAGGTT
3' ss Score
6.81
Exon sequences
Seq C1 exon
GAGTTCGTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGG
Seq A exon
GTAAGGCTAACATTGTTCCTTCATCTATTCTGCAATAATATGTTTTATGTAGTAGTACTTGCTGTGACCCAAACCTAGGTGTGGTTTATAATAAAGTAGGAAACAAGCAGAGCTGATTCCTACTCTCATAGATTCTCTGGTAGTAGGTCCCGTTTCATTCAGCTGAGAGGTTTTCAAGTGTGTGACTGAGATTAACGATAATTTTCTAAAATAAAAGGTTCTCATTCTTGTCTATAGGGAATGCTCACTGAGTAAAGGAAGTTACTGTAAAAGTACTATGCCCAAAGTTTAAATTCTTAGCAATCACATGCAAAGCTGTTGTTGTAGATAGCAAGTGATAGCTGAGAGCTGTTGGGGATGGAAATAGATAAGTGCTGGGGATTGTTGGACAATAGCCTAGCTCCAAGTTCAATGAGAGACTTTCTCCAGGGAATGAAGTAGAGTTATAGATCAGTGACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGTGGGAGGAAGGGAGGGAGGGAGGGAGAGATTTATTAAAGTTAACTTTGAAAATAAAATAAGAAAAATTAATTTATTTCTAAAAGTTTTCATTTTTGTTTTTGGGGTGTAGCTCAGTAGTAGAGTGCTTTTCTAGATAGTACAAGGTCTTGGTTTTCATTCCTAGCACTTACCATAAAAAAGGCCATATTCTTTTGGATGGCAAAATGTATGAGTCTTTGTGGTTTTCTTTTTTTAACGAGAGACTTTTATTGTGTTCCTTAAAAAAGTGGCACCATCATTTTGTTGCTTCTAAGTCAGCCTTATCCATATACAGATAACCCTGAAGACCAAATTGTTGACCACAGTCTAATGGAAGGCTTGTTCATCTGCATGGTCCTCTTTCAACATGTGTCTTTCCCCGTGAGTAG
Seq C2 exon
GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684:ENSRNOT00000034254:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.393
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTGACATTTCAAGATATTGCT
R:
CTGGAGAAGGACACTGCTGAA
Band lengths:
222-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]