RnoALTA0045629-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19887752-19888901:+
Coord C1 exon
chr8:19887752-19887878
Coord A exon
chr8:19888712-19888844
Coord C2 exon
chr8:19888845-19888901
Length
133 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCAGCCTTATCCATATACAGATA
3' ss Score
5.97
Exon sequences
Seq C1 exon
GAGTTCGTGACATTTCAAGATATTGCTGTTGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCATTGG
Seq A exon
ATAACCCTGAAGACCAAATTGTTGACCACAGTCTAATGGAAGGCTTGTTCATCTGCATGGTCCTCTTTCAACATGTGTCTTTCCCCGTGAGTAGGTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAG
Seq C2 exon
AGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684-8-13,8-12,8-11,8-10-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTGACATTTCAAGATATTGCT
R:
GAAGGACACTGCTGAATGCCT
Band lengths:
178-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]