HsaALTA1026386-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8725499-8726943:-
Coord C1 exon
chr2:8726887-8726943
Coord A exon
NA
Coord C2 exon
chr2:8725499-8725599
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTTCTCATTTCTTCTGACAGTTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAAGAAAATGCTGGCCTTGAGATAGATAGCTCTTCAGAGGATCCAGATTAAACTAAG
Seq A exon
NA
Seq C2 exon
TTCGAGTCACTTCTCACAGTTGACTTCCTCACCAAATAATAAGGGGGTGAAGAAGACTCGGCCTACCTACTACTCAGTAATCCTGCTGTCCAGTCGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-86-80,86-79-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAAATGCTGGCCTTGAGA
R:
TCGACTGGACAGCAGGATTACT
Band lengths:
154-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains