HsaEX0034356 @ hg38
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8721081-8733680:-
Coord C1 exon
chr2:8733444-8733680
Coord A exon
chr2:8726887-8726943
Coord C2 exon
chr2:8721081-8725599
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTAAACCCTTTCATGCCTAGGAA
3' ss Score
8.32
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTACTAGAAATGAGAAACGCAGAAAGCCACGTGGTCCCTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGAACACGCTTGGCCTGGATGAAGGTGCCCCTCGTCACAGTAATCTAAGTTGGCAG
Seq A exon
GAAGAAAATGCTGGCCTTGAGATAGATAGCTCTTCAGAGGATCCAGATTAAACTAAG
Seq C2 exon
TTCGAGTCACTTCTCACAGTTGACTTCCTCACCAAATAATAAGGGGGTGAAGAAGACTCGGCCTACCTACTACTCAGTAATCCTGCTGTCCAGTCGACTGGAGAAGAGAGATTTGTTCACCTCTACTAGTTTTATTTGTTCTTAGTAGTTGTAGAATTTAAATTGGTTTTAATGAAATGTTCCTTTTATGAAATTTTAAATAAAAGCCATTTAGTGTATATTTAGTATAGCAAGAAGCATGTGAATAAGCTCCATATAACCTGACATTGCGCATCTTACAGCATCCTCTTGGTCAGATGTCTAATAAAAAGATTGTTATTTTCAAATTTATCATAGTTCCTGCAACTTGCACTTTTTAAAGCTGTGTTTGTGAGAATTTATAGACTGCATATCGCTATACTTGATGGAAATTAAACTATTTTTATTTTGAAAGAAGTTAATTTATATTTTAAGTTCTGTATGTTTTTCTCCTTTTACCTGAGTTCTTTTCAGTCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-'78-80,'78-77,86-80=AN
Average complexity
A_C2
Mappability confidence:
100%=91=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENST00000256707fB18275
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAAGAGCTGAACACGCT
R:
TAGGCCGAGTCTTCTTCACCC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development