HsaEX1018790 @ hg38
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8726887-8733680:-
Coord C1 exon
chr2:8733444-8733680
Coord A exon
chr2:8731902-8731982
Coord C2 exon
chr2:8726887-8726943
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGTCTTCACAGTCA
3' ss Score
10.46
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTACTAGAAATGAGAAACGCAGAAAGCCACGTGGTCCCTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGAACACGCTTGGCCTGGATGAAGGTGCCCCTCGTCACAGTAATCTAAGTTGGCAG
Seq A exon
TCACAAACTCGCAGAACCCCAAGTCTTTCGAGTCTCAATTCCCAGGATTCCAGTATTGAAATTTCAAAGCTTACTGATAAG
Seq C2 exon
GAAGAAAATGCTGGCCTTGAGATAGATAGCTCTTCAGAGGATCCAGATTAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313_MULTIEX3-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=0.928 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000496383fB18279
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACGAGCTGCCTCACAC
R:
ATCTGGATCCTCTGAAGAGCT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains