MmuEX0025395 @ mm9
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25738663-25746142:+
Coord C1 exon
chr12:25738663-25738899
Coord A exon
chr12:25741447-25741527
Coord C2 exon
chr12:25746083-25746142
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGTCTTCACAGTCA
3' ss Score
10.46
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTCTTAGAAATGAGAAGTGTGGAAAACCAGGTGGTCCCCGAAGACCCACGTTTTCTCAATGAAAACTCCAGTGCCCCCGTTGCTCATGGGGAATCTGCTCGCCGCACTTCTCACAGTGAACTGCCCCACACGGAGCTTTCCAGCCAGACTCCCTACACCCTGAACTTCAGCTTTGAAGAACTGAACACGCTTGGCCTAGACGAGGGAGCCCCACGGCACAGTAATCTGAGTTGGCAG
Seq A exon
TCACAAACTCGCAGAACCCCAAGTCTCTCGAGTCTCAATTCCCAGGACTCCAGTATTGAAATTTCAAAGCTTACTGATAAG
Seq C2 exon
GAAGAAAATGCCGCCCCTGTGCTAGATAGACAGCGGTTCAGAAGATCCAGTTTAAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.917 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACTTCTCACAGTGAACT
R:
TGTCTATCTAGCACAGGGGCG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: