MmuEX0025395 @ mm10
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25053798-25061278:+
Coord C1 exon
chr12:25053798-25054034
Coord A exon
chr12:25056582-25056662
Coord C2 exon
chr12:25061218-25061278
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGTCTTCACAGTCA
3' ss Score
10.46
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTCTTAGAAATGAGAAGTGTGGAAAACCAGGTGGTCCCCGAAGACCCACGTTTTCTCAATGAAAACTCCAGTGCCCCCGTTGCTCATGGGGAATCTGCTCGCCGCACTTCTCACAGTGAACTGCCCCACACGGAGCTTTCCAGCCAGACTCCCTACACCCTGAACTTCAGCTTTGAAGAACTGAACACGCTTGGCCTAGACGAGGGAGCCCCACGGCACAGTAATCTGAGTTGGCAG
Seq A exon
TCACAAACTCGCAGAACCCCAAGTCTCTCGAGTCTCAATTCCCAGGACTCCAGTATTGAAATTTCAAAGCTTACTGATAAG
Seq C2 exon
GAAGAAAATGCCGCCCCTGTGCTAGATAGACAGCGGTTCAGAAGATCCAGTTTAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=0.912 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACTTCTCACAGTGAACT
R:
TGTCTATCTAGCACAGGGGCG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types