RnoEX0046707 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44316940-44324679:+
Coord C1 exon
chr6:44316940-44317176
Coord A exon
chr6:44319944-44320024
Coord C2 exon
chr6:44324619-44324679
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGTCTTCACAGTCA
3' ss Score
10.46
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTCTTAGAAATGAGAAGTGTGGAAAGCCAGGTGGTCCCTGAAGACCCTCGTTTTCTCAATGAAAACTCCAGTGCCCCAGTTCCTCATGGAGAGTCTGCTCGCCGCTCTTCTCACACTGAGCTGCCCCTCACGGAGCTTTCCAGCCAGACTCCATACACCCTGAACTTCAGCTTTGAAGAACTGAACACGCTTGGCCTTGATGAGGGAGCCCCTAGGCACAGTAACCTGAGTTGGCAG
Seq A exon
TCACAAACTCGCAGAACCCCAAGTCTCTCGAGTCTCAATTCCCAGGACTCCAGTATTGAAATTTCAAAGCTTACTGATAAG
Seq C2 exon
GAAGAAAACGCTGCCCCTGTGCTAGATAGACAGCGGTTCAGAAGATCCAGTTTAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.872 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTTCTCACACTGAGCTG
R:
TGTCTATCTAGCACAGGGGCA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]