HsaALTA1026985-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128880997-128881725:-
Coord C1 exon
chr7:128881626-128881725
Coord A exon
chr7:128881086-128881237
Coord C2 exon
chr7:128880997-128881085
Length
152 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGAGGCCTGATGTCTAATAGGCC
3' ss Score
5.13
Exon sequences
Seq C1 exon
GACCTGACATGGCTCTGCATCCACCAGGCTTGTCCTGAGCTCAGCTGTCCCCTCTCAGAGCGCCACACTCCCCCTGGGAGCTGCTGCCCCGTATGCCGGG
Seq A exon
GCCCTGTGGATATTGGCTGAAGAAATCAACACCATCAGGGTGGTAGGGACACGGAGTGGGTGCTTTCCTGCCGTGAAATGCTGGGTAAGCTCCAAGGAGGGAGGATACAGCAGGAGGGACAGTGCCTGCCCATCCCATGTCTCCCCCCTCAG
Seq C2 exon
AATGTGTGGTGGAGGCCGAGGGCCGGAGAGTGGCAGATGGAGAGAGCTGGCGGGACCCCAGCAATGCGTGCATCGCCTGCACCTGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-46-52,46-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(64.6=91.2)
A:
NA
C2:
PF0009313=VWC=PU(45.2=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGACATGGCTCTGCATC
R:
ATGGCAGGTGCAGGCGAT
Band lengths:
189-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains