HsaEX0033142 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128880997-128882016:-
Coord C1 exon
chr7:128881937-128882016
Coord A exon
chr7:128881626-128881725
Coord C2 exon
chr7:128880997-128881085
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTCACATGGGCAGGAC
3' ss Score
6.15
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGGCCTTGAGTAACTGTTCAGAGGGCCTGCTGGGATCTGAGCTAGCCCCACCAGACCCCTGCTACACGTGCCAGTGCCAG
Seq A exon
GACCTGACATGGCTCTGCATCCACCAGGCTTGTCCTGAGCTCAGCTGTCCCCTCTCAGAGCGCCACACTCCCCCTGGGAGCTGCTGCCCCGTATGCCGGG
Seq C2 exon
AATGTGTGGTGGAGGCCGAGGGCCGGAGAGTGGCAGATGGAGAGAGCTGGCGGGACCCCAGCAATGCGTGCATCGCCTGCACCTGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX4-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(31.2=55.6)
A:
PF0009313=VWC=PD(64.6=91.2)
C2:
PF0009313=VWC=PU(45.2=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTAACTGTTCAGAGGGCCT
R:
ATGGCAGGTGCAGGCGAT
Band lengths:
163-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development