MmuEX6003385 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29435418-29437576:-
Coord C1 exon
chr6:29437497-29437576
Coord A exon
chr6:29437181-29437280
Coord C2 exon
chr6:29435418-29435560
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTTACGTGCTCACAATAGGAT
3' ss Score
7.43
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGGCACTGAGTAACTGCACAGAGGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAG
Seq A exon
GATCTGACGTGGCTCTGTACTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGTGTAAAG
Seq C2 exon
ACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAACAGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'34-40,'34-39,35-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(34.0=63.0)
A:
PF0009313=VWC=PD(62.0=91.2)
C2:
PF0009313=VWC=PU(72.4=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTGAGTAACTGCACAG
R:
CTACATGCGAGCTTCCTGCAG
Band lengths:
219-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: