BtaEX0018910 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93659357-93660330:-
Coord C1 exon
chr4:93660251-93660330
Coord A exon
chr4:93659955-93660054
Coord C2 exon
chr4:93659357-93659445
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTCCTATGCCCTTCCATAGGAC
3' ss Score
8.73
5' ss Seq
AGGGTTCGT
5' ss Score
3.88
Exon sequences
Seq C1 exon
AGGCGCTGAGCCACTGCACAGAGCACCTGCTGGGGTCTGAGTTGACCCCACCAGACCCCTGCTACAGCTGCCAGTGCCAG
Seq A exon
GACCTGACTTGGCTCTGCATTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGCCTGAACGCTACATACCCCCTGGGAGCTGCTGCCCCATGTGCCAGG
Seq C2 exon
ACTGTGTGGTGGAGGCTGCGGGCCGGACAGCGGCGGATGGAGAGAGCTGGAGGGACCCCAGCAACGCCTGTGTCACGTGCACCTGCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449_MULTIEX1-17/25=16-18
Average complexity
S
Mappability confidence:
95%=95=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(36.5=70.4)
A:
PF0009313=VWC=PD(59.6=91.2)
C2:
PF0009313=VWC=PU(45.2=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCACTGCACAGAGC
R:
CAGGTGCACGTGACACAGG
Band lengths:
159-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development