GgaEX1063579 @ galGal4
Exon Skipping
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:410064-412683:+
Coord C1 exon
chr5:410064-410146
Coord A exon
chr5:410226-410304
Coord C2 exon
chr5:410414-412683
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCCCCATGCCACAGCTC
3' ss Score
7.83
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACTGCAACTACGAGGGCAGGAAAGTGGTGAACGGGCAGAGCTTCAGCCCCGAGGGCCGGCCCTGCACCCGCTGTACCTGCCAG
Seq A exon
CTCGGGGAGGTGAGCTGTGAGGAGAGGCCGTGTCCCCAGTCCTGCACTGAGCCCACTGCCTGCTGCCCCCCTTGCCAAG
Seq C2 exon
CAGACGGCCAGCTGCAGAGCAGTGACACATCCCCATCTCTGTCCCCGTCCCCAACCCCGCAGCCATCATCCCAATCCTCATCTCCGTCCCCATCCCCGTCTCCATCCTCGTCCCCATCGCCGTCCCACGAGGGCACACCCCAGTCCCCCCGCCACCGCCTGGCCCAGGTCCTGCTCCACACCACCCCCCTCAGCCACTCTCTAGGGGGGGAGCCCCCTCCCAACGCCCCCAGCCCCCCGTCGGGCTGCCCTGGCGAGGCCACAGGATCCCCAGCCCTCAGCAGCAGCCCCAGCTCGAGGCAGGACGCTCAGGAACATCCTGAGGACGTGGACATGGACACATAGAACCACTCACACCCAGAGGAGGAGGAGGGCGAGGAGGAGGAAGGCTGCTGGATTAGCGAGCCTGGCCGGCCAGGCACAGCTGGAGATGGGGCACTGAGGTGCGCAGTTGGATGCGCCGAGCAAACCAGGGGTGGTGACACATCCTTGAGCAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.424
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTACGAGGGCAGGAAAG
R:
GGACGGAGATGAGGATTGGGA
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]