BtaEX6102694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40476888-40482181:-
Coord C1 exon
chr29:40482099-40482181
Coord A exon
chr29:40481649-40481739
Coord C2 exon
chr29:40476888-40476898
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTCTGTTTCCCCAGCTG
3' ss Score
9.77
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGCAACTACGAGGGGAGGAAGGTGGGGAACGGCCAAGTGTTCACCTTGGACGATGAGCCCTGTACCCAGTGCGTATGCCAG
Seq A exon
CTGGGAGAGGTTACCTGCGAGAAGGTGTCCTGCCAGCAGGCTTGCTCGGACCGCACCATGCCCCGCAGGGACTGCTGCTCCTCCTGTCCAG
Seq C2 exon
ATTCGATCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'25-27,'25-26,26-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.4=92.9)
A:
PF0009313=VWC=PD(50.0=90.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]