MmuEX6031525 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10659588-10665210:+
Coord C1 exon
chr19:10659588-10659670
Coord A exon
chr19:10659980-10660043
Coord C2 exon
chr19:10664091-10665210
Length
64 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTCTGCTTCTTCAGCTG
3' ss Score
9.2
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG
Seq A exon
CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG
Seq C2 exon
ATTCTGTGTTTCCTCTAGAAGAAAAGCAGCAACCATCCCCTCATGGAGAACTTGCCAAAGCTGCACGGAACGCCCGTGGAGACACTGAAGTCCCTGTCAACTGTAGCTCCTGCCCGGGGCCTCCATCGGCATCACCTACAAGACCCATGGTCCACCTCCTGCAGAGGCTTTTAAGAACAAACCTGTCTAACATACAGTCTGCATCCCCAAGCCCTCCCATAGCCCAGACCTCATCCTCACCCCTGTTGGAGCCAGAGGGCATATCTCTTGGGAAGCCCAGAGCCTCCCAGCCCCCCGAGCCCTCAGCAGGGTCACCTGTCTCTCCTAGACTGTCCACTCTACCTCCAGCCATTCCAGGGACTCCTTTGTCACCTGTCACTCCAGAAAGCTCTTCTTCAACCTTTGGGACTCAGACAGCATTCCAGTGGCTTCTGTCTGCCACCCCCTTAACTGAGGCAGAAACACCTTCAATGACCAATGCTGACCTCTCAGAGACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'24-25,'24-24,25-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.897
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(40.0=92.9)
A:
PF0009313=VWC=FE(32.3=100)
C2:
PF0009313=VWC=PD(24.6=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTGGATGATGAGCCCT
R:
AGGGACTTCAGTGTCTCCACG
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types