DreEX6064106 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6960326-6961265:-
Coord C1 exon
chr18:6961183-6961265
Coord A exon
chr18:6961000-6961099
Coord C2 exon
chr18:6960326-6960414
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATGTATGTTTGTGCGTGTAGGAT
3' ss Score
7.99
5' ss Seq
ATGGTACGA
5' ss Score
7.82
Exon sequences
Seq C1 exon
AGCCCCTCAGTAACTGCACAGCGACTCTGATTGGTAATGAAGTGTTGGCCACTGACGACCCGTGTTTTACCTGCCAGTGCAAG
Seq A exon
GATTTGACATGGACGTGTGTTCACCGTGGTTGTCCTCCTCTGAGCTGCTCTCCATCTGACCAGCACACTCCTCCTGACTCCTGCTGCCCCATCTGTGATG
Seq C2 exon
TGTGTGTATTAGAGGGCAGCAACACCCGTGTGCCAGATGGCCATAGATGGACAGACAAGGAGAATGAGTGCACAACCTGCATCTGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'44-42,'44-41,45-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(37.7=71.4)
A:
PF0009313=VWC=PD(58.5=91.2)
C2:
PF0009313=VWC=PU(45.2=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCTCAGTAACTGCACAG
R:
CAGGTTGTGCACTCATTCTCCT
Band lengths:
162-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]