BtaINT0079958 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93659955-93660330:-
Coord C1 exon
chr4:93660251-93660330
Coord A exon
chr4:93660055-93660250
Coord C2 exon
chr4:93659955-93660054
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTCCTATGCCCTTCCATAGGAC
3' ss Score
8.73
Exon sequences
Seq C1 exon
AGGCGCTGAGCCACTGCACAGAGCACCTGCTGGGGTCTGAGTTGACCCCACCAGACCCCTGCTACAGCTGCCAGTGCCAG
Seq A exon
GTGAGCCCTCTTTCCTTGGGGACTCCTCCAGCCCCCTCTTTTTCCTCCTCTGTTGCTGTGACTCCTCTCTTTAGCACCTCCAGGCTTCCCAATCACCCCAGCAACATTCACCCACTTATCCTGAATGTCACATTCCACCTAGCCCCTGCGCCTTCCCTGCGGTTTCTTCCTGTGCTGTTCCTATGCCCTTCCATAG
Seq C2 exon
GACCTGACTTGGCTCTGCATTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGCCTGAACGCTACATACCCCCTGGGAGCTGCTGCCCCATGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(36.5=70.4)
A:
NA
C2:
PF0009313=VWC=PD(59.6=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCACTGCACAGAGC
R:
CACATGGGGCAGCAGCTC
Band lengths:
169-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]