HsaINT0084789 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128881626-128882016:-
Coord C1 exon
chr7:128881937-128882016
Coord A exon
chr7:128881726-128881936
Coord C2 exon
chr7:128881626-128881725
Length
211 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTGTGTTCACATGGGCAGGAC
3' ss Score
6.15
Exon sequences
Seq C1 exon
AGGCCTTGAGTAACTGTTCAGAGGGCCTGCTGGGATCTGAGCTAGCCCCACCAGACCCCTGCTACACGTGCCAGTGCCAG
Seq A exon
GTGAGCCCTCCTGCCTTGGGGACTCACAGAGCCCCTCTTCTTCCTTCTCTGTGGGCTGTGGCTGCCACTCCTCTCCCGCAGCAGCTCCAGGGCTCTCCATTCGCCCTGACATTTGCCCACTTGTCCTGACTGTCACATCCTGCCTATGCCTTACTCCTCCACCAGCTCCCTGAGATCTGCCATTCTCTACCTCTTGTGTTCACATGGGCAG
Seq C2 exon
GACCTGACATGGCTCTGCATCCACCAGGCTTGTCCTGAGCTCAGCTGTCCCCTCTCAGAGCGCCACACTCCCCCTGGGAGCTGCTGCCCCGTATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(31.2=55.6)
A:
NA
C2:
PF0009313=VWC=PD(64.6=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGAGTAACTGTTCAGAGGGC
R:
CATACGGGGCAGCAGCTC
Band lengths:
172-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development