HsaALTA1028218-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:23745]
Coordinates
chr9:124857364-124857602:+
Coord C1 exon
chr9:124857364-124857411
Coord A exon
NA
Coord C2 exon
chr9:124857502-124857602
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCACCTTCTACTCTTAGCAGGGA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCAACACAGGAAAGTGCCTTGAGACCCTGAAG
Seq A exon
NA
Seq C2 exon
GGAGTCCTGGATGTGGCCCACACCTGTGCCTTCACCCCAGATGGGAAAATCTTAGTGTCTGGAGCTGCCGATCAGACTAGACGTCAAATATCCCGCACGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-8-15,8-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=25.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGTGCCTTGAGACCCT
R:
TCTAGTCTGATCGGCAGCTCC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains