HsaALTA1030051-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000139567 | ACVRL1
Description
activin A receptor like type 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
chr12:51914439-51915500:+
Coord C1 exon
chr12:51914439-51914585
Coord A exon
chr12:51915225-51915359
Coord C2 exon
chr12:51915360-51915500
Length
135 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGG
5' ss Score
1.56
3' ss Seq
CCCAACCTTTCTGCACACAGGCT
3' ss Score
7.68
Exon sequences
Seq C1 exon
GAAAAGGCCGCTATGGCGAAGTGTGGCGGGGCTTGTGGCACGGTGAGAGTGTGGCCGTCAAGATCTTCTCCTCGAGGGATGAACAGTCCTGGTTCCGGGAGACTGAGATCTATAACACAGTGTTGCTCAGACACGACAACATCCTAG
Seq A exon
GCTTCATCGCCTCAGACATGACCTCCCGCAACTCGAGCACGCAGCTGTGGCTCATCACGCACTACCACGAGCACGGCTCCCTCTACGACTTTCTGCAGAGACAGACGCTGGAGCCCCATCTGGCTCTGAGGCTAG
Seq C2 exon
CTGTGTCCGCGGCATGCGGCCTGGCGCACCTGCACGTGGAGATCTTCGGTACACAGGGCAAACCAGCCATTGCCCACCGCGACTTCAAGAGCCGCAATGTGCTGGTCAAGAGCAACCTGCAGTGTTGCATCGCCGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139567-19-14,19-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(87.0=95.2)
A:
NA
C2:
PF0006920=Pkinase=FE(31.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGCACGGTGAGAGTG
R:
AACACTGCAGGTTGCTCTTGA
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains