MmuALTA0001115-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101136984-101137639:+
Coord C1 exon
chr15:101136984-101137130
Coord A exon
chr15:101137364-101137461
Coord C2 exon
chr15:101137462-101137639
Length
98 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGC
5' ss Score
1.14
3' ss Seq
TCACACCCTTCTGCTTACAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GAAAGGGCCGATATGGTGAGGTGTGGCGCGGTTCGTGGCATGGCGAGAGTGTGGCGGTCAAGATTTTCTCCTCACGAGATGAGCAGTCCTGGTTCCGGGAGACGGAGATCTACAACACAGTTCTGCTTAGACACGACAACATCCTAG
Seq A exon
GCTTCATCGCCTCCGACATGACTTCGCGGAACTCGAGCACGCAGCTGTGGCTCATCACCCACTACCATGAACACGGCTCCCTCTATGACTTTCTGCAG
Seq C2 exon
AGGCAGACGCTGGAGCCCCAGTTGGCCCTGAGGCTAGCTGTGTCCGCGGCCTGCGGCCTGGCGCACCTACATGTGGAGATCTTTGGCACTCAAGGCAAACCAGCCATTGCCCATCGTGACCTCAAGAGTCGCAATGTGCTGGTCAAGAGTAACTTGCAGTGTTGCATTGCAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-16-23,16-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATGAGCAGTCCTGGTT
R:
TGGTTTGCCTTGAGTGCCAAA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types