HsaALTA1030081-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000139624 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chr12:50135519-50135838:-
Coord C1 exon
chr12:50135732-50135838
Coord A exon
chr12:50135617-50135652
Coord C2 exon
chr12:50135519-50135616
Length
36 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTCATTTTGCCCATTCAGTTT
3' ss Score
8.29
Exon sequences
Seq C1 exon
GCAGCCAAACTGGCCAATTATGCCAAGTATCAGCGGCTCTGTGACACCCTTTTTGTGATCTTCAGTGCTGTTTTTATGGTTACACGACTAGGAATCTATCCATTCTG
Seq A exon
TTTTTCTGTTCTATTCTATTCTACTTTCGCCAATAG
Seq C2 exon
AACACAAGAACCCTATTGCCCTGCTTTTACCTTAGCCTGTGCTGACCTTCTGTGGACTCTCATAGGACCTCTGCTGCCTCAGACCGTATTTCTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139624-53-44,53-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(22.5=94.4)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.2=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAGCGGCTCTGTGACAC
R:
GGCTAAGGTAAAAGCAGGGCA
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains