HsaEX1009590 @ hg38
Exon Skipping
Gene
ENSG00000178449 | COX14
Description
COX14, cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:28216]
Coordinates
chr12:50111979-50166029:+
Coord C1 exon
chr12:50111979-50112301
Coord A exon
chr12:50120036-50120293
Coord C2 exon
chr12:50165026-50166029
Length
258 bp
Sequences
Splice sites
3' ss Seq
AATTCAATCTGTCTTTGTAGGGG
3' ss Score
8.2
5' ss Seq
CAGGTCAAC
5' ss Score
2.31
Exon sequences
Seq C1 exon
GGAAGTTCAAAGCCGGCCTCCAGCCAGAGTGACGGCCTGCGCGGACTCCCGCCTTAGTGGGCGGAGTTGTGCCGCGTCTGATGCGCAGTTCCCTTTATAGCGCGGCAAGCCGAATCCTAGAGGCTAACCCGGCAGGTGGGAGGGAGAAAGTTGCTTTCTGCACCAATAGCTGAGGCGTTCAGGGTTGTCCAGGGACGCTACCCTCACGTGTCTGGTTCCGAGTGCTGCGTTCGGCTGTGCTGGGAAGTTGCGTAGACAGTGGCCTCGAGACCCTGCCTGCCTGAGGAGGCCTCGGTTGGATGCGAAGGAGCTGCAGCATCCAG
Seq A exon
GGGACAAGATGCCAACTGGCAAGCAGCTAGCTGACATTGGCTATAAGACCTTCTCTACCTCCATGATGCTTCTCACTGTGTATGGGGGGTACCTCTGCAGTGTCCGAGTCTACCACTATTTCCAGTGGCGCAGGGCCCAGCGCCAGGCCGCAGAAGAACAGAAGACCTCAGGAATCATGTAGAACTGGGGGGCTTTTTCTCCTGAGCAGAGAGGCCCAAGGCATGCTGTGGAGAGACTTCACCTGCCACCATTTCCAG
Seq C2 exon
AGACTATGGAAGAGAGTACCTGGATCTAGTTTATTCCAAAGACAGACAAGCAGTTTGTGCCTCCACTCCAGGATGACTAACTACAACGATTACACGTAAAAAGACAAAACAAGGCCGGGCGCGGCGGTTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGTATTACGAGGTCAGGAGATCGAGACCTTCCTGGCTAAGACGGTGAATCCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGACATGGTGGCGGGCGCCTGTAGTTTCAGCTACTCGGGAGACTGAAGCAGGAGAATGGCGTGAACCCGAGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAAAAAAACCTTGCTACACTAAGTTCCTGAGGGCCAAGGAAAGCCATTTAGATCTTTGGGTTTCATTTGCTTCACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178449_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF148801=COX14=WD(100=96.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCAGTTCCCTTTATAGCG
R:
GGAGGCACAAACTGCTTGTCT
Band lengths:
306-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains