HsaALTA1030929-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin like [Source:HGNC Symbol;Acc:HGNC:2524]
Coordinates
chr16:67930737-67930999:-
Coord C1 exon
chr16:67930920-67930999
Coord A exon
chr16:67930744-67930807
Coord C2 exon
chr16:67930737-67930743
Length
64 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTAATCCCACCCCCTTGCAGCCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GACAGCAGCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGCCAGTCCTGGGTGGTCACTGCTGCCCACTGCAATGTCAG
Seq A exon
CCCTGGCCGCCATTTTGTTGTCCTGGGCGAGTATGACCGATCATCAAACGCAGAGCCCTTGCAG
Seq C2 exon
GTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086-5-5,5-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(12.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains