RnoALTA0010705-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019353 | Ctrl
Description
chymotrypsin-like [Source:RGD Symbol;Acc:621501]
Coordinates
chr19:37906647-37906916:-
Coord C1 exon
chr19:37906837-37906916
Coord A exon
chr19:37906703-37906728
Coord C2 exon
chr19:37906647-37906702
Length
26 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CAGTCTCATTATCCTTGCAGGCC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GATAACACCGGCTTCCACTTCTGTGGTGGTTCTCTCATTGCCCCAAACTGGGTGGTCACGGCTGCCCACTGCAAAGTCAC
Seq A exon
GCCTGGACGCCACTTTGTCATTTTAG
Seq C2 exon
GAGAATATGACCGATCTTCCAATGCTGAGCCTATACAGGTGCTCTCCATCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019353-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTTCTCTCATTGCCC
R:
TTCGAGATGGAGAGCACCTGT
Band lengths:
113-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]