HsaALTA1031688-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:HGNC:24722]
Coordinates
chr19:52013146-52017359:-
Coord C1 exon
chr19:52017117-52017359
Coord A exon
NA
Coord C2 exon
chr19:52013146-52013246
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTCTTTTTTAAGAGACAGGGT
3' ss Score
-4.3
Exon sequences
Seq C1 exon
GAATCGGGAAAGTTGACAGTCATCTGCAAGAGCACTCTCCAAACCAAAGACTTCTGAAGAGCGTGCAGCAATGCAATGGACAGAATACACTTAGAAATATTGTACATCTCAGCAAGACACATTTTCCTATAGTGCAAAATCATGATACATTTGACTTGTACAGAAAAAATTTGAAATCAAGTTTAAGTTTAATCAACCAGAAGAGAAGACATGGAATAAATAACCCTGTTGAGTTTATTGGAG
Seq A exon
NA
Seq C2 exon
GGTCTCTTGAGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACGTGGCGAAACCCTGTGTCTACTAAAAATACACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556-13-13,13-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCAGAAGAGAAGACATGGA
R:
TCTGACCTCAAGTGATCCGCC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains