HsaEX1045320 @ hg38
Exon Skipping
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:HGNC:24722]
Coordinates
chr19:52012765-52017359:-
Coord C1 exon
chr19:52017096-52017359
Coord A exon
chr19:52015643-52015764
Coord C2 exon
chr19:52012765-52013252
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAACTCAGACTTCATTAAACATC
3' ss Score
-9.33
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAATCGGGAAAGTTGACAGTCATCTGCAAGAGCACTCTCCAAACCAAAGACTTCTGAAGAGCGTGCAGCAATGCAATGGACAGAATACACTTAGAAATATTGTACATCTCAGCAAGACACATTTTCCTATAGTGCAAAATCATGATACATTTGACTTGTACAGAAAAAATTTGAAATCAAGTTTAAGTTTAATCAACCAGAAGAGAAGACATGGAATAAATAACCCTGTTGAGTTTATTGGAGGTGAGAAAACACTTCTACATG
Seq A exon
ATCAGTGTGTTTCTAGCCAATTGGAACATAAACATGGTGCTGCCTGTTGACAGATGTGTGTCTGTCCTCAGGAGGTGAAATAATTTGCCCTAGAGATCAATTTGATGAATACAGTAAATAAG
Seq C2 exon
AGACAGGGTCTCTTGAGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACGTGGCGAAACCCTGTGTCTACTAAAAATACACACAAAAAATTAGCTGGGTATGGTGCTGGGCTGTTGGGAGCCGAAGGCCCATGGGATGTGACCAACTCAGCATTCCACTGGAGGCTATATGATCAAACAGCAAACTTTATCATGAATGCACGATGTGGGCAAACTCATGACTGCTTCCGCTGCCAGAAGGTTTGCTGAGGGCAATCGCTTCCTGGTGCTGAGCTCCTTGAGGTTATCTACTGGGACATCTAGAGAATGCCATCTTGCAAACCCTACTCTGGACTGAGTAGCTGACCCCTTCTTCCACCCGCCTTCTCACTATCTCTTTTGCCTAATAAATATGGAGGGCTGTGTAAAGCTCAGGGCCCTTGTCCACTAGAGGCAAGGTGTCCCCTGATCCCTTCTTCCAAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=0.000 C2=0.632
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAATGCAATGGACAGA
R:
TCTGACCTCAAGTGATCCGCC
Band lengths:
250-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains