HsaALTA1032246-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151408694-151411771:-
Coord C1 exon
chr1:151411625-151411771
Coord A exon
NA
Coord C2 exon
chr1:151408694-151408825
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TCCCTCCCCCACTTCAGAAGAGA
3' ss Score
-0.45
Exon sequences
Seq C1 exon
GTGTGTCAATATCGCTCCTCACTCTACTCTGAGGTAGATGTCCATTTTCGGATGATCCATGAGGATACCCGGCATCTGCTCTGCCCTTATTGCCTGAAGGTCTTCAAAAATGGCAATGCATTCCAACAGCATTACATGAGGCACCAG
Seq A exon
NA
Seq C2 exon
AGAAATGTTTATCACTGCAACAAATGCCGGCTGCAGTTTCTCTTTGCCAAGGACAAAATTGAACACAAGCTTCAACACCATAAAACCTTCCGTAAACCCAAGCAGCTGGAGGGCTTGAAACCAGGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442-47-51,47-50-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=49.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAATGCATTCCAACAGC
R:
GTCCTTGGCAAAGAGAAACTGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains