MmuALTA0013684-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94679022-94680692:+
Coord C1 exon
chr3:94679022-94679168
Coord A exon
NA
Coord C2 exon
chr3:94680561-94680692
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
GCTTTTCTTCACTTTAGAAGAGA
3' ss Score
0.46
Exon sequences
Seq C1 exon
GTGTGTCAGTATCGCTCCTCCCTCTACTCTGAAGTAGATGTCCATTTTCGGATGATCCATGAAGATACTCGGCATTTGCTTTGCCCGTATTGCCTAAAAGTCTTCAAAAATGGCAATGCCTTCCAGCAACACTACATGAGGCACCAG
Seq A exon
NA
Seq C2 exon
AGAAATGTTTATCACTGCAACAAATGCCGGCTGCAGTTTCTCTTTGCCAAGGACAAAATTGAACACAAGCTGCAGCACCATAAAACCTTCCGTAAGCCTAAGCAACTGGAAGGCTTGAAACCAGGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902-20-20,20-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=49.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACTACATGAGGCACCA
R:
TATGGTGCTGCAGCTTGTGTT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: